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Merge branch 'birdweather' of github.com:mcguirepr89/BirdNET-Pi into birdweather

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Patrick McGuire
2021-11-29 11:45:43 -05:00
parent 726f6bd6cf 58e5ce70fe
commit 3dce3a3db1
1 changed files with 109 additions and 46 deletions
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analyze.py
+109 -46
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@@ -13,10 +13,15 @@ import librosa
import numpy as np
import math
import time
from decimal import Decimal
import json
###############################################################################
import requests
import mysql.connector
###############################################################################
from datetime import date, datetime
###############################################################################
import datetime
from pathlib import Path
def loadModel():
global INPUT_LAYER_INDEX
@@ -187,6 +192,7 @@ def main():
# Parse passed arguments
parser = argparse.ArgumentParser()
parser.add_argument('--s', type=int, default=99999, help='BirdWeather station id.')
parser.add_argument('--i', help='Path to input file.')
parser.add_argument('--o', default='result.csv', help='Path to output file. Defaults to result.csv.')
parser.add_argument('--lat', type=float, default=-1, help='Recording location latitude. Set -1 to ignore.')
@@ -196,6 +202,7 @@ def main():
parser.add_argument('--sensitivity', type=float, default=1.0, help='Detection sensitivity; Higher values result in higher sensitivity. Values in [0.5, 1.5]. Defaults to 1.0.')
parser.add_argument('--min_conf', type=float, default=0.1, help='Minimum confidence threshold. Values in [0.01, 0.99]. Defaults to 0.1.')
parser.add_argument('--custom_list', default='', help='Path to text file containing a list of species. Not used if not provided.')
parser.add_argument('--meta_data', default='Testing', help='Location meta_data for BirdWeather station.')
args = parser.parse_args()
@@ -208,75 +215,131 @@ def main():
else:
WHITE_LIST = []
station_id = args.s
location_meta_data = args.meta_data
# Read audio data
audioData = readAudioData(args.i, args.overlap)
# Process audio data and get detections
week = max(1, min(args.week, 48))
# Get Date/Time from filename in case Pi gets behind
#now = datetime.now()
full_file_name = args.i
file_name = Path(full_file_name).stem
file_date = file_name.split('-birdnet-')[0]
file_time = file_name.split('-birdnet-')[1]
date_time_str = file_date + ' ' + file_time
date_time_obj = datetime.datetime.strptime(date_time_str, '%Y-%m-%d %H:%M:%S')
#print('Date:', date_time_obj.date())
#print('Time:', date_time_obj.time())
print('Date-time:', date_time_obj)
now = date_time_obj
current_date = now.strftime("%Y/%m/%d")
current_time = now.strftime("%H:%M:%S")
current_iso8601 = now.isoformat()
week_number = int(now.strftime("%V"))
week = max(1, min(week_number, 48))
sensitivity = max(0.5, min(1.0 - (args.sensitivity - 1.0), 1.5))
# Process audio data and get detections
detections = analyzeAudioData(audioData, args.lat, args.lon, week, sensitivity, args.overlap, interpreter)
# Write detections to output file
min_conf = max(0.01, min(args.min_conf, 0.99))
writeResultsToFile(detections, min_conf, args.o)
now = datetime.now()
###############################################################################
###############################################################################
soundscape_uploaded = False
# Write detections to Database
for i in detections:
print("\n", detections[i][0],"\n")
print("\n", detections[i][0],"\n")
with open('BirdDB.txt', 'a') as rfile:
for d in detections:
print("\n", "Database Entry", "\n")
for entry in detections[d]:
if entry[1] >= min_conf and (entry[0] in WHITE_LIST or len(WHITE_LIST) == 0):
current_date = now.strftime("%Y/%m/%d")
current_time = now.strftime("%H:%M:%S")
rfile.write(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';') + ';' \
+ str(entry[1]) +";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';' \
+ str(sensitivity) +';' + str(args.overlap) + '\n')
for d in detections:
print("\n", "Database Entry", "\n")
for entry in detections[d]:
if entry[1] >= min_conf and (entry[0] in WHITE_LIST or len(WHITE_LIST) == 0):
rfile.write(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';') + ';' \
+ str(entry[1]) +";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';' \
+ str(sensitivity) +';' + str(args.overlap) + '\n')
def insert_variables_into_table(Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap):
try:
connection = mysql.connector.connect(host='localhost',
database='birds',
user='birder',
password='databasepassword')
cursor = connection.cursor()
mySql_insert_query = """INSERT INTO detections (Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap)
VALUES (%s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s) """
def insert_variables_into_table(Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap):
try:
connection = mysql.connector.connect(host='localhost',
database='birds',
user='birder',
password='changeme')
cursor = connection.cursor()
mySql_insert_query = """INSERT INTO detections (Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap)
VALUES (%s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s) """
record = (Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap)
cursor.execute(mySql_insert_query, record)
connection.commit()
print("Record inserted successfully into detections table")
except mysql.connector.Error as error:
print("Failed to insert record into detections table {}".format(error))
record = (Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap)
finally:
if connection.is_connected():
connection.close()
print("MySQL connection is closed")
cursor.execute(mySql_insert_query, record)
connection.commit()
print("Record inserted successfully into detections table")
species = entry[0]
sci_name,com_name = species.split('_')
insert_variables_into_table(str(current_date), str(current_time), sci_name, com_name, \
str(entry[1]), str(args.lat), str(args.lon), str(min_conf), str(week), \
str(args.sensitivity), str(args.overlap))
except mysql.connector.Error as error:
print("Failed to insert record into detections table {}".format(error))
finally:
if connection.is_connected():
connection.close()
print("MySQL connection is closed")
print(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';') + ';' + str(entry[1]) +";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';' + str(args.sensitivity) +';' + str(args.overlap) + '\n')
species = entry[0]
sci_name,com_name = species.split('_')
insert_variables_into_table(str(current_date), str(current_time), sci_name, com_name, \
str(entry[1]), str(args.lat), str(args.lon), str(min_conf), str(week), \
str(args.sensitivity), str(args.overlap))
if station_id != 99999:
print(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';') + ';' + str(entry[1]) +";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';' + str(args.sensitivity) +';' + str(args.overlap) + '\n')
if soundscape_uploaded is False:
# POST soundscape to server
post_url = "https://app.birdweather.com/api/v1/soundscapes" + "?timestamp=" + current_iso8601
time.sleep(3)
with open(args.i, 'rb') as f:
wav_data = f.read()
response = requests.post(url=post_url, data=wav_data, headers={'Content-Type': 'application/octet-stream'})
print("Soundscape POST Response Status - ", response.status_code)
sdata = response.json()
soundscape_id = sdata['soundscape']['id']
soundscape_uploaded = True
now = datetime.now()
# POST detection to server
api_url = "https://app.birdweather.com/api/v1/detections"
start_time = d.split(';')[0]
end_time = d.split(';')[1]
post_begin = "{ "
post_station_id = "\"stationId\": \"" + str(station_id) + "\","
now_p_start = now + datetime.timedelta(seconds=float(start_time))
current_iso8601 = now_p_start.isoformat();
post_timestamp = "\"timestamp\": \"" + current_iso8601 + "\","
post_lat = "\"lat\": " + str(args.lat) + ","
post_lon = "\"lon\": " + str(args.lon) + ","
post_soundscape_id = "\"soundscapeId\": " + str(soundscape_id) + ","
post_soundscape_start_time = "\"soundscapeStartTime\": " + start_time + ","
post_soundscape_end_time = "\"soundscapeEndTime\": " + end_time + ","
post_commonName = "\"commonName\": \"" + entry[0].split('_')[1] + "\","
post_scientificName = "\"scientificName\": \"" + entry[0].split('_')[0] + "\","
post_algorithm = "\"algorithm\": " + "\"alpha\"" + ","
post_confidence = "\"confidence\": " + str(entry[1]) + ","
post_metadata = "\"metadata\": { \"location\": \"" + location_meta_data + "\" }"
post_end = " }"
post_json = post_begin + post_station_id + post_timestamp + post_lat + post_lon + post_soundscape_id + post_soundscape_start_time + post_soundscape_end_time + post_commonName + post_scientificName + post_algorithm + post_confidence + post_metadata + post_end
print(post_json)
response = requests.post(api_url, json=json.loads(post_json))
print("Detection POST Response Status - ", response.status_code)
#time.sleep(3)
###############################################################################
###############################################################################