#!/home/pi/BirdNET-Pi/birdnet/bin/python3 import pandas as pd import seaborn as sns # import numpy as np import matplotlib.pyplot as plt from matplotlib.colors import LogNorm from datetime import datetime import textwrap #Read database into Pandas dataframe df = pd.read_csv('~/BirdNET-Pi/BirdDB.txt', sep=';') #Convert Date and Time Fields to Panda's format df['Date']=pd.to_datetime(df['Date']) df['Time']=pd.to_datetime(df['Time']) #Add round hours to dataframe df['Hour of Day'] = [r.hour for r in df.Time] #Create separate dataframes for separate locations df_jhb=df[df.Lat > -32] df_ec = df[df.Lat < -32] #Get todays readings for Joburg now = datetime.now() df_jhb_today = df_jhb[df_jhb['Date']==now.strftime("%Y-%m-%d")] # Definition to start getting top N detections - work in process def filter_by_freq(df: pd.DataFrame, column: str, min_freq: int) -> pd.DataFrame: """Filters the DataFrame based on the value frequency in the specified column. :param df: DataFrame to be filtered. :param column: Column name that should be frequency filtered. :param min_freq: Minimal value frequency for the row to be accepted. :return: Frequency filtered DataFrame. """ # Frequencies of each value in the column. freq = df[column].value_counts() # Select frequent values. Value is in the index. frequent_values = freq[freq >= min_freq].index # Return only rows with value frequency above threshold. return df[df[column].isin(frequent_values)] #Get top readings today min_valuecounts = 2 jhb_gt_min = filter_by_freq (df_jhb_today,'Com_Name', min_valuecounts) jhb_gt_min_counts = jhb_gt_min['Com_Name'].value_counts() print(jhb_gt_min_counts) jhb_top10_today = (df_jhb_today['Com_Name'].value_counts()[:10]) df_jhb_top10_today = df_jhb_today[df_jhb_today.Com_Name.isin(jhb_top10_today.index)] #Get bottom 10 today jhb_bot10_today=(df_jhb_today['Com_Name'].value_counts()[-10:]) df_jhb_bot10_today = df_jhb_today[df_jhb_today.Com_Name.isin(jhb_bot10_today.index)] #Set Palette for graphics pal = "Greens" #Set up plot axes and titles f, axs = plt.subplots(1, 2, figsize = (10, 4), gridspec_kw=dict(width_ratios=[3, 5])) plt.subplots_adjust(left=None, bottom=None, right=None, top=None, wspace=0, hspace=None) #Generate frequency plot plot=sns.countplot(y='Com_Name', data = df_jhb_top10_today, palette = pal+"_r", order=pd.value_counts(df_jhb_top10_today['Com_Name']).iloc[:20].index, ax=axs[0]) #Try plot grid lines between bars - problem at the moment plots grid lines on bars - want between bars # plot.grid(True, axis='y') plot.set_yticklabels(['\n'.join(textwrap.wrap(ticklabel.get_text(),15)) for ticklabel in plot.get_yticklabels()]) plot.set(ylabel=None) plot.set(xlabel="Detections") #Generate crosstab matrix for heatmap plot heat = pd.crosstab(df_jhb_top10_today['Com_Name'],df_jhb_top10_today['Hour of Day']) #Order heatmap Birds by frequency of occurrance heat.index = pd.CategoricalIndex(heat.index, categories = pd.value_counts(df_jhb_top10_today['Com_Name']).iloc[:10].index) heat.sort_index(level=0, inplace=True) hours_in_day = pd.Series(data = range(0,24)) heat_frame = pd.DataFrame(data=0, index=heat.index, columns = hours_in_day) heat=(heat+heat_frame).fillna(0) #Generatie heatmap plot plot = sns.heatmap(heat, norm=LogNorm(), annot=True, annot_kws={"fontsize":7}, cmap = pal , square = False, cbar=False, linewidths = 0.5, linecolor = "Grey", ax=axs[1], yticklabels = False) # Set heatmap border for _, spine in plot.spines.items(): spine.set_visible(True) plot.set(ylabel=None) plot.set(xlabel="Hour of Day") #Set combined plot layout and titles plt.tight_layout() f.subplots_adjust(top=0.9) plt.suptitle("Last Updated: "+ str(now.strftime("%B, %d at %I:%M%P"))) #Save combined plot savename='/home/pi/BirdSongs/Extracted/Combo-'+str(now.strftime("%d-%m-%Y"))+'.png' plt.savefig(savename) plt.close() #Get bottom 10 today jhb_bot10_today=(df_jhb_today['Com_Name'].value_counts()[-10:]) df_jhb_bot10_today = df_jhb_today[df_jhb_today.Com_Name.isin(jhb_bot10_today.index)] #Set Palette for graphics pal = "Reds" #Set up plot axes and titles f, axs = plt.subplots(1, 2, figsize = (8, 4), gridspec_kw=dict(width_ratios=[3, 5])) #Generate frequency plot plot=sns.countplot(y='Com_Name', data = df_jhb_bot10_today, palette = pal+"_r", order=pd.value_counts(df_jhb_bot10_today['Com_Name']).iloc[:10].index, ax=axs[0]) plot.set_yticklabels(['\n'.join(textwrap.wrap(ticklabel.get_text(),17)) for ticklabel in plot.get_yticklabels()]) plot.set(ylabel=None) plot.set(xlabel="no. of detections") #Generate crosstab matrix for heatmap plot heat = pd.crosstab(df_jhb_bot10_today['Com_Name'],df_jhb_bot10_today['Hour of Day']) #Order heatmap Birds by frequency of occurrance heat.index = pd.CategoricalIndex(heat.index, categories = pd.value_counts(df_jhb_bot10_today['Com_Name']).iloc[:10].index) heat.sort_index(level=0, inplace=True) heat_frame = pd.DataFrame(data=0, index=heat.index, columns = hours_in_day) heat=(heat+heat_frame).fillna(0) #Generate heatmap plot plot = sns.heatmap(heat, norm=LogNorm(), annot=True, annot_kws={"fontsize":7}, cmap = pal , square = False, cbar=False, linewidths = 0.5, linecolor = "Grey", ax=axs[1], yticklabels = False) # Set heatmap border for _, spine in plot.spines.items(): spine.set_visible(True) plot.set(ylabel=None) #Set combined plot layout and titles plt.tight_layout() f.subplots_adjust(top=0.9) plt.suptitle("Bottom 10 Detected: "+ str(now.strftime("%d-%h-%Y %H:%M"))) plot.set(xlabel="Hour of Day") #Save combined plot savename='/home/pi/BirdSongs/Extracted/Combo2-'+str(now.strftime("%d-%m-%Y"))+'.png' plt.savefig(savename) plt.close()