import os import streamlit as st import pandas as pd import numpy as np import plotly.graph_objects as go from plotly.subplots import make_subplots from datetime import timedelta, datetime from pathlib import Path import sqlite3 from sqlite3 import Connection userDir = os.path.expanduser('~') URI_SQLITE_DB = userDir + '/BirdNET-Pi/scripts/birds.db' st.set_page_config(layout='wide') # Remove whitespace from the top of the page and sidebar st.markdown(""" """, unsafe_allow_html=True) @st.cache(hash_funcs={Connection: id}) def get_connection(path:str): return sqlite3.connect(path,check_same_thread=False) def get_data(conn: Connection): df1=pd.read_sql("SELECT * FROM detections", con=conn) return df1 conn = get_connection(URI_SQLITE_DB) # Read in the cereal data # df = load_data() df=get_data(conn) df2=df.copy() df2['DateTime']=pd.to_datetime(df2['Date'] + " " + df2['Time']) df2=df2.set_index('DateTime') # Filter on date range # Date as calendars # Start_Date = pd.to_datetime(st.sidebar.date_input('Which date do you want to start?', value = df2.index.min())) # End_Date = pd.to_datetime(st.sidebar.date_input('Which date do you want to end?', value = df2.index.max())) # Date as slider Start_Date = pd.to_datetime(df2.index.min()).date() End_Date = pd.to_datetime(df2.index.max()).date() Date_Slider = st.slider('Date Range', min_value = Start_Date-timedelta(days=1), max_value = End_Date, value=(Start_Date, End_Date) ) filt = (df2.index >= pd.Timestamp(Date_Slider[0])) & (df2.index <= pd.Timestamp(Date_Slider[1]+timedelta(days=1))) df2 = df2[filt] #Create species count for selected date range Specie_Count=df2['Com_Name'].value_counts() #Create species treemap # Create Hourly Crosstab hourly=pd.crosstab(df2['Com_Name'],df2.index.hour, dropna=False) # Filter on species species = list(hourly.index) cols1,cols2= st.columns((1,1)) top_N = cols1.slider( 'Select Number of Birds to Show', min_value = 1, value=min(10,len(Specie_Count)) ) top_N_species = (df2['Com_Name'].value_counts()[:top_N]) specie = cols2.selectbox('Which bird would you like to explore for the dates '+str(Date_Slider[0])+' to '+str(Date_Slider[1])+'?', species, index=species.index(list(top_N_species.index)[0])) font_size=15 #specie filter filt=df2['Com_Name']==specie df_counts=df2[filt].resample('D').count() fig = make_subplots( rows=3, cols =2, specs= [[{"type":"xy","rowspan":3}, {"type":"polar","rowspan":2}], [{"rowspan":1}, {"rowspan":1} ], [None, {"type":"xy","rowspan":1}]], subplot_titles=('Top '+ str(top_N) + ' Species in Date Range '+str(Date_Slider[0])+' to '+str(Date_Slider[1])+'', 'Total Detect:'+str('{:,}'.format(sum(df_counts.Time)))+ ' Confidence Max:'+str('{:.2f}%'.format(max(df2[df2['Com_Name']==specie]['Confidence'])*100))+ ' '+' Median:'+str('{:.2f}%'.format(np.median(df2[df2['Com_Name']==specie]['Confidence'])*100)) ) ) fig.layout.annotations[1].update(x=0.7,y=0.25, font_size=15) #Plot seen species for selected date range and number of species fig.add_trace(go.Bar(y=top_N_species.index, x=top_N_species, orientation='h'), row=1,col=1) fig.update_layout( margin=dict(l=0, r=0, t=50, b=0), yaxis={'categoryorder':'total ascending'}) # Set 360 degrees, 24 hours for polar plot theta = np.linspace(0.0, 360, 24, endpoint=False) d=pd.DataFrame(np.zeros((23,1))).squeeze() detections = hourly.loc[specie] detections=(d+detections).fillna(0) fig.add_trace(go.Barpolar(r = detections, theta=theta), row=1, col=2) fig.update_layout( autosize=False, width = 1000, height = 500, showlegend=False, polar = dict( radialaxis = dict( tickfont_size = font_size, showticklabels = True, hoverformat = "#%{theta}:
Popularity: %{percent}
%{r}" ), angularaxis = dict( tickfont_size= font_size, rotation = -90, direction = 'clockwise', tickmode='array', tickvals=[0,15,35,45,60,75,90,105,120,135,150,165,180,195,210,225,240,255,270,285,300,315,330,345], ticktext=['12am','1am','2am','3am','4am','5am', '6am','7am','8am','9am','10am','11am','12pm','1pm','2pm','3pm','4pm','5pm', '6pm','7pm','8pm','9pm','10pm','11pm'], hoverformat = "#%{theta}:
Popularity: %{percent}
%{r}" ), ), ) daily=pd.crosstab(df2['Com_Name'],df2.index.date, dropna=False) fig.add_trace(go.Bar(x=daily.columns, y=daily.loc[specie]), row=3, col=2) # container=st.container() # config={'displayModelBar': False} st.plotly_chart(fig, use_container_width=True) #, config=config) # cols3,cols4=st.columns((1,1)) # # extract_date=Date_Slider # # audio_file = open('/home/*/BirdSongs/Extracted/By_Date/2022-03-22/Yellow-streaked_Greenbul/Yellow-streaked_Greenbul-77-2022-03-22-birdnet-15:04:28.mp3', 'rb') # audio_bytes = audio_file.read() # cols4.audio(audio_bytes, format='audio/mp3')