From f03f69cc632f7956eac34b33ea8c2b7c13f4bc8b Mon Sep 17 00:00:00 2001
From: ehpersonal38 <103586016+ehpersonal38@users.noreply.github.com>
Date: Mon, 16 Jan 2023 13:21:44 -0500
Subject: [PATCH] fixes

---
 scripts/config.php | 4 ++--
 scripts/species.py | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/scripts/config.php b/scripts/config.php
index 58cb948..d9c073f 100644
--- a/scripts/config.php
+++ b/scripts/config.php
@@ -356,8 +356,8 @@ function sendTestNotification(e) {
       </select>
       <br>
       <span <?php if($config['MODEL'] == "BirdNET_6K_GLOBAL_MODEL") { ?>style="display: none"<?php } ?> id="soft">
-      <label for="sf_thresh">Species Occurence Frequency Threshold: </label>
-      <input name="sf_thresh" type="number" max="0.99" min="0.01" step="0.01" value="<?php print($config['SF_THRESH']);?>"/> <span onclick="document.getElementById('sfhelp').style.display='unset'" style="text-decoration:underline;cursor:pointer">[?]</span><br>
+      <label for="sf_thresh">Species Occurence Frequency Threshold [0.005, 0.99]: </label>
+      <input name="sf_thresh" type="number" max="0.99" min="0.0005" step="0.01" value="<?php print($config['SF_THRESH']);?>"/> <span onclick="document.getElementById('sfhelp').style.display='unset'" style="text-decoration:underline;cursor:pointer">[?]</span><br>
       <p id="sfhelp" style='display:none'>This value is used by the model to constrain the list of possible species that it will try to detect, given the minimum occurence frequency. A 0.05 threshold means that the species is seen on average at least 5% of the time, from historically collected data for your lat/lon.<br>If you'd like to tinker with this value and see the species list output, you can run the following command AFTER clicking 'Update Settings' at the very bottom of this page to install the appropriate labels file: <b>~/BirdNET-Pi/birdnet/bin/python3 ~/BirdNET-Pi/scripts/species.py --threshold 0.05</b></p>
       </span>
 
diff --git a/scripts/species.py b/scripts/species.py
index 3426f61..77da697 100644
--- a/scripts/species.py
+++ b/scripts/species.py
@@ -71,13 +71,13 @@ def predictFilter(lat, lon, week):
 
     return M_INTERPRETER.get_tensor(M_OUTPUT_LAYER_INDEX)[0]
 
-def explore(lat, lon, week):
+def explore(lat, lon, week, threshold):
 
     # Make filter prediction
     l_filter = predictFilter(lat, lon, week)
 
     # Apply threshold
-    l_filter = np.where(l_filter >= 0.03, l_filter, 0)
+    l_filter = np.where(l_filter >= threshold, l_filter, 0)
 
     # Zip with labels
     l_filter = list(zip(l_filter, CLASSES))
@@ -92,7 +92,7 @@ def getSpeciesList(lat, lon, week, threshold=0.05, sort=False):
     print('Getting species list for {}/{}, Week {}...'.format(lat, lon, week), end='', flush=True)
 
     # Extract species from model
-    pred = explore(lat, lon, week)
+    pred = explore(lat, lon, week, threshold)
 
     # Make species list
     slist = []