remove obsolete services
This commit is contained in:
frederik
@@ -297,14 +297,6 @@ if(isset($_GET['view'])){
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'sudo systemctl restart birdnet_log.service',
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'sudo systemctl disable --now birdnet_log.service',
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'sudo systemctl enable --now birdnet_log.service',
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'sudo systemctl stop extraction.service',
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'sudo systemctl restart extraction.service',
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'sudo systemctl disable --now extraction.service',
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'sudo systemctl enable --now extraction.service',
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'sudo systemctl stop birdnet_server.service',
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'sudo systemctl restart birdnet_server.service',
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'sudo systemctl disable --now birdnet_server.service',
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'sudo systemctl enable --now birdnet_server.service',
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'sudo systemctl stop birdnet_analysis.service',
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'sudo systemctl restart birdnet_analysis.service',
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'sudo systemctl disable --now birdnet_analysis.service',
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@@ -1,123 +0,0 @@
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import argparse
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import socket
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HEADER = 64
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PORT = 5050
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FORMAT = 'utf-8'
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DISCONNECT_MESSAGE = "!DISCONNECT"
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SERVER = "localhost"
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ADDR = (SERVER, PORT)
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client = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
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client.connect(ADDR)
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def send(msg):
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message = msg.encode(FORMAT)
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msg_length = len(message)
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send_length = str(msg_length).encode(FORMAT)
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send_length += b' ' * (HEADER - len(send_length))
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client.send(send_length)
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client.send(message)
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print(client.recv(2048).decode(FORMAT))
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def main():
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global INCLUDE_LIST
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global EXCLUDE_LIST
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# Parse passed arguments
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parser = argparse.ArgumentParser()
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parser.add_argument('--i', help='Path to input file.')
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parser.add_argument(
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'--o',
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default='result.csv',
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help='Path to output file. Defaults to result.csv.')
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parser.add_argument(
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'--lat',
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type=float,
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default=-1,
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help='Recording location latitude. Set -1 to ignore.')
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parser.add_argument(
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'--lon',
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type=float,
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default=-1,
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help='Recording location longitude. Set -1 to ignore.')
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parser.add_argument(
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'--week',
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type=int,
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default=-1,
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help='Week of the year when the recording was made. Values in [1, 48] (4 weeks per month). Set -1 to ignore.')
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parser.add_argument(
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'--overlap',
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type=float,
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default=0.0,
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help='Overlap in seconds between extracted spectrograms. Values in [0.0, 2.9]. Defaults tp 0.0.')
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parser.add_argument(
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'--sensitivity',
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type=float,
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default=1.0,
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help='Detection sensitivity; Higher values result in higher sensitivity. Values in [0.5, 1.5]. Defaults to 1.0.')
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parser.add_argument(
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'--min_conf',
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type=float,
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default=0.1,
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help='Minimum confidence threshold. Values in [0.01, 0.99]. Defaults to 0.1.')
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parser.add_argument(
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'--include_list',
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default='null',
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help='Path to text file containing a list of included species. Not used if not provided.')
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parser.add_argument(
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'--exclude_list',
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default='null',
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help='Path to text file containing a list of excluded species. Not used if not provided.')
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parser.add_argument(
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'--birdweather_id',
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default='99999',
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help='Private Station ID for BirdWeather.')
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args = parser.parse_args()
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sockParams = ''
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if args.i:
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sockParams += 'i=' + args.i + '||'
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if args.o:
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sockParams += 'o=' + args.o + '||'
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if args.birdweather_id:
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sockParams += 'birdweather_id=' + args.birdweather_id + '||'
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if args.include_list:
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sockParams += 'include_list=' + args.include_list + '||'
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if args.exclude_list:
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sockParams += 'exclude_list=' + args.exclude_list + '||'
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if args.overlap:
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sockParams += 'overlap=' + str(args.overlap) + '||'
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if args.week:
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sockParams += 'week=' + str(args.week) + '||'
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if args.sensitivity:
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sockParams += 'sensitivity=' + str(args.sensitivity) + '||'
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if args.min_conf:
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sockParams += 'min_conf=' + str(args.min_conf) + '||'
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if args.lat:
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sockParams += 'lat=' + str(args.lat) + '||'
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if args.lon:
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sockParams += 'lon=' + str(args.lon) + '||'
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send(sockParams)
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send(DISCONNECT_MESSAGE)
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# time.sleep(3)
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###############################################################################
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###############################################################################
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if __name__ == '__main__':
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main()
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# Example calls
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# python3 analyze.py --i 'example/XC558716 - Soundscape.mp3' --lat 35.4244 --lon -120.7463 --week 18
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# python3 analyze.py --i 'example/XC563936 - Soundscape.mp3' --lat 47.6766
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# --lon -122.294 --week 11 --overlap 1.5 --min_conf 0.25 --sensitivity
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# 1.25 --custom_list 'example/custom_species_list.txt'
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@@ -1,196 +0,0 @@
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#!/usr/bin/env -S --default-signal=PIPE bash
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# Runs BirdNET-Lite
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#set -x
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source /etc/birdnet/birdnet.conf
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# Document this run's birdnet.conf settings
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# Make a temporary file to compare the current birdnet.conf with
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# the birdnet.conf as it was the last time this script was called
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my_dir=$HOME/BirdNET-Pi/scripts
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if [ -z ${THIS_RUN} ];then THIS_RUN=$my_dir/thisrun.txt;fi
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[ -f ${THIS_RUN} ] || touch ${THIS_RUN} && chmod g+w ${THIS_RUN}
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if [ -z ${LAST_RUN} ];then LAST_RUN=$my_dir/lastrun.txt;fi
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[ -z ${LATITUDE} ] && echo "LATITUDE not set, exiting 1" && exit 1
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[ -z ${LONGITUDE} ] && echo "LONGITUDE not set, exiting 1" && exit 1
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make_thisrun() {
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sleep .4
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awk '!/#/ && !/^$/ {print}' /etc/birdnet/birdnet.conf \
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> >(tee "${THIS_RUN}")
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sleep .5
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}
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make_thisrun &> /dev/null
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if ! diff ${LAST_RUN} ${THIS_RUN};then
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echo "The birdnet.conf file has changed"
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if grep REC <(diff $LAST_RUN $THIS_RUN);then
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echo "Recording element changed -- restarting 'birdnet_recording.service'"
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sudo systemctl stop birdnet_recording.service
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sudo rm -rf ${RECS_DIR}/$(date +%B-%Y/%d-%A)/*
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sudo systemctl start birdnet_recording.service
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fi
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cat ${THIS_RUN} > ${LAST_RUN}
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fi
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INCLUDE_LIST="$HOME/BirdNET-Pi/include_species_list.txt"
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EXCLUDE_LIST="$HOME/BirdNET-Pi/exclude_species_list.txt"
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if [ ! -f ${INCLUDE_LIST} ];then
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touch ${INCLUDE_LIST} &&
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chmod g+rw ${INCLUDE_LIST}
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fi
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if [ ! -f ${EXCLUDE_LIST} ];then
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touch ${EXCLUDE_LIST} &&
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chmod g+rw ${EXCLUDE_LIST}
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fi
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if [ "$(du ${INCLUDE_LIST} | awk '{print $1}')" -lt 4 ];then
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INCLUDE_LIST=null
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fi
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if [ "$(du ${EXCLUDE_LIST} | awk '{print $1}')" -lt 4 ];then
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EXCLUDE_LIST=null
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fi
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# Create an array of the audio files
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# Takes one argument:
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# - {DIRECTORY}
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get_files() {
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files=($( find ${1} -maxdepth 1 -name '*wav' ! -size 0\
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| sort \
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| head -n 20 \
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| awk -F "/" '{print $NF}' ))
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[ -n "${files[1]}" ] && echo "Files loaded"
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}
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# Move all files that have been analyzed already into newly created "Analyzed"
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# directory
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# Takes one argument:
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# - {DIRECTORY}
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move_analyzed() {
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for i in "${files[@]}";do
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j="${i}.csv"
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if [ -f "${1}/${j}" ];then
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if [ ! -d "${1}-Analyzed" ];then
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mkdir -p "${1}-Analyzed" && echo "'Analyzed' directory created"
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fi
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mv "${1}/${i}" "${1}-Analyzed/"
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mv "${1}/${j}" "${1}-Analyzed/"
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fi
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done
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}
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# Run BirdNET-Lite on the WAVE files from get_files()
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# Uses one argument:
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# - {DIRECTORY}
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run_analysis() {
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PYTHON_VIRTUAL_ENV="$HOME/BirdNET-Pi/birdnet/bin/python3"
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DIR="$HOME/BirdNET-Pi/scripts"
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sleep .5
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### TESTING NEW WEEK CALCULATION
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WEEK_OF_YEAR="$(echo "($(date +%m)-1) * 4" | bc -l)"
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DAY_OF_MONTH="$(date +%d)"
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if [ ${DAY_OF_MONTH} -le 7 ];then
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WEEK="$(echo "${WEEK_OF_YEAR} + 1" |bc -l)"
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elif [ ${DAY_OF_MONTH} -le 14 ];then
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WEEK="$(echo "${WEEK_OF_YEAR} + 2" |bc -l)"
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elif [ ${DAY_OF_MONTH} -le 21 ];then
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WEEK="$(echo "${WEEK_OF_YEAR} + 3" |bc -l)"
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elif [ ${DAY_OF_MONTH} -ge 22 ];then
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WEEK="$(echo "${WEEK_OF_YEAR} + 4" |bc -l)"
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fi
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for i in "${files[@]}";do
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[ ! -f ${1}/${i} ] && continue
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echo "${1}/${i}" > $HOME/BirdNET-Pi/analyzing_now.txt
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[ -z ${RECORDING_LENGTH} ] && RECORDING_LENGTH=15
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echo "RECORDING_LENGTH set to ${RECORDING_LENGTH}"
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itr=0
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until [ -z "$(lsof -t ${1}/${i})" ];do
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itr=$((itr+1))
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if [ $itr -eq $(($RECORDING_LENGTH * 3)) ]; then
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echo "Maximum number of attempts exceeded. Exiting & restarting service."
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exit
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fi
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sleep 2
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done
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if ! grep 5050 <(netstat -tulpn 2>&1) &> /dev/null 2>&1;then
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echo "Waiting for socket"
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until grep 5050 <(netstat -tulpn 2>&1) &> /dev/null 2>&1;do
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sleep 1
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done
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fi
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# prepare optional parameters for analyze.py
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if [ -f ${INCLUDE_LIST} ]; then
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INCLUDEPARAM="--include_list ${INCLUDE_LIST}"
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else
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INCLUDEPARAM=""
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fi
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if [ -f ${EXCLUDE_LIST} ]; then
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EXCLUDEPARAM="--exclude_list ${EXCLUDE_LIST}"
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else
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EXCLUDEPARAM=""
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fi
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if [ ! -z $BIRDWEATHER_ID ]; then
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BIRDWEATHER_ID_PARAM="--birdweather_id ${BIRDWEATHER_ID}"
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BIRDWEATHER_ID_LOG="--birdweather_id \"IN_USE\""
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else
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BIRDWEATHER_ID_PARAM=""
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BIRDWEATHER_ID_LOG=""
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fi
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echo $PYTHON_VIRTUAL_ENV "$DIR/analyze.py" \
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--i "${1}/${i}" \
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--o "${1}/${i}.csv" \
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--lat $(echo "${LATITUDE}" | awk '{print int($1+0.5)}').XX \
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--lon $(echo "${LONGITUDE}" | awk '{print int($1+0.5)}').XX \
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--week "${WEEK}" \
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--overlap "${OVERLAP}" \
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--sensitivity "${SENSITIVITY}" \
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--min_conf "${CONFIDENCE}" \
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${INCLUDEPARAM} \
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${EXCLUDEPARAM} \
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${BIRDWEATHER_ID_LOG}
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$PYTHON_VIRTUAL_ENV $DIR/analyze.py \
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--i "${1}/${i}" \
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--o "${1}/${i}.csv" \
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--lat "${LATITUDE}" \
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--lon "${LONGITUDE}" \
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--week "${WEEK}" \
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--overlap "${OVERLAP}" \
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--sensitivity "${SENSITIVITY}" \
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--min_conf "${CONFIDENCE}" \
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${INCLUDEPARAM} \
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${EXCLUDEPARAM} \
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${BIRDWEATHER_ID_PARAM}
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if [ ! -z $HEARTBEAT_URL ]; then
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echo "Performing Heartbeat"
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IP=`curl -s ${HEARTBEAT_URL}`
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echo "Heartbeat: $IP"
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fi
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done
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}
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# The three main functions
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# Takes one argument:
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# - {DIRECTORY}
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run_birdnet() {
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get_files "${1}"
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move_analyzed "${1}"
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run_analysis "${1}"
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}
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until grep 5050 <(netstat -tulpn 2>&1) &> /dev/null 2>&1;do
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sleep 1
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done
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if [ $(find ${RECS_DIR}/StreamData -maxdepth 1 -name '*wav' 2>/dev/null| wc -l) -gt 0 ];then
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find $RECS_DIR -maxdepth 1 -name '*wav' -type f -size 0 -delete
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run_birdnet "${RECS_DIR}/StreamData"
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fi
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YESTERDAY="$RECS_DIR/$(date --date="yesterday" "+%B-%Y/%d-%A")"
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TODAY="$RECS_DIR/$(date "+%B-%Y/%d-%A")"
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if [ $(find ${YESTERDAY} -name '*wav' 2>/dev/null | wc -l) -gt 0 ];then
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find $YESTERDAY -name '*wav' -type f -size 0 -delete
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run_birdnet "${YESTERDAY}"
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elif [ $(find ${TODAY} -name '*wav' 2>/dev/null | wc -l) -gt 0 ];then
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find $TODAY -name '*wav' -type f -size 0 -delete
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run_birdnet "${TODAY}"
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fi
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@@ -1,2 +1,2 @@
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#!/usr/bin/env bash
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journalctl --no-hostname -q -o short -fu birdnet_analysis -ubirdnet_server -uextraction | sed "s/$(date "+%b %d ")//g;s/${HOME//\//\\/}\///g;/Line/d;/find/d;/systemd/d;s/ .*\[.*\]: /---/"
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journalctl --no-hostname -q -o short -fu birdnet_analysis | sed "s/$(date "+%b %d ")//g;s/${HOME//\//\\/}\///g;/Line/d;/find/d;/systemd/d;s/ .*\[.*\]: /---/"
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@@ -11,7 +11,6 @@ my_dir=${HOME}/BirdNET-Pi/scripts
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echo "Stopping services"
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sudo systemctl stop birdnet_recording.service
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sudo systemctl stop birdnet_analysis.service
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sudo systemctl stop birdnet_server.service
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echo "Removing all data . . . "
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sudo rm -drf "${RECS_DIR}"
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sudo rm -f "${IDFILE}"
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@@ -1,163 +0,0 @@
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#!/usr/bin/env bash
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# Exit when any command fails
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#set -x
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set -e
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# Keep track of the last executed command
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#trap 'last_command=$current_command; current_command=$BASH_COMMAND' DEBUG
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## Echo an error message before exiting
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#trap 'echo "\"${last_command}\" command exited with code $?."' EXIT
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# Remove temporary file
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trap 'rm -f $TMPFILE' EXIT
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source /etc/birdnet/birdnet.conf
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[ -z ${RECORDING_LENGTH} ] && RECORDING_LENGTH=15
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# Set Variables
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TMPFILE=$(mktemp)
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#SCAN_DIRS are all directories marked "Analyzed"
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SCAN_DIRS=($(find $RECS_DIR -type d -name '*Analyzed' 2>/dev/null | sort ))
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for h in "${SCAN_DIRS[@]}";do
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# The TMPFILE is created from each .csv file BirdNET creates
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# within each "Analyzed" directory
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# Field 1: Start (s)
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# Field 2: End (s)
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# Field 3: Scientific name
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# Field 4: Common name
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# Field 5: Confidence
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# Iterates over each "Analyzed" directory
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for i in $(find ${h} -name '*csv' 2>/dev/null | sort );do
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# Iterates over each '.csv' file found in each "Analyzed" directory
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# to create the TMPFILE
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echo "$(basename ${i})" >> ${TMPFILE}
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sort -k1n -t\; "${i}" | awk '!/Start/{print}' >> ${TMPFILE}
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done
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# The extraction reads each line of the TMPFILE and sets the variables ffmpeg
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# will use.
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while read -r line;do
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echo "Line = $line"
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DATE="$(echo "${line}" \
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| awk -F- '/birdnet/{print $1"-"$2"-"$3}')"
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if [ ! -z ${DATE} ];then
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OLDFILE="$(echo "${line}" | awk -F. '/birdnet/{print $1"."$2}')" ; continue
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fi
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if [ -z ${DATE} ];then
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DATE=$(date "+%F")
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fi
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START="$(echo "${line}" | awk -F\; '!/birdnet/{print $1}')"
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END="$(echo "${line}" | awk -F\; '!/birdnet/{print $2}')"
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COMMON_NAME=""$(echo ${line} \
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| awk -F\; '!/birdnet/{print $4}'|tr -d "'")""
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SCIENTIFIC_NAME=""$(echo ${line} \
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| awk -F\; '!/birdnet/{print $3}')""
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CONFIDENCE=""$(echo ${line} \
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| awk -F\; '{print $5}')""
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#CONFIDENCE_SCORE="${CONFIDENCE:0:2}%"
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locale_decimal=$(locale decimal_point)
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if [[ $locale_decimal == "." ]]; then
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CONFIDENCE_SCORE="$(printf %.0f "$(echo "scale=2; ${CONFIDENCE} * 100" | bc)")"
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else
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CONFIDENCE_SCORE="$(printf %.0f "$(echo "scale=2; "${CONFIDENCE}" * 100" | bc | tr '.' ',')")"
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fi
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NEWFILE="${COMMON_NAME// /_}-${CONFIDENCE_SCORE}-${OLDFILE//.wav/.${AUDIOFMT}}"
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echo "NEWFILE=$NEWFILE"
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NEWSPECIES_BYDATE="${EXTRACTED}/By_Date/${DATE}/${COMMON_NAME// /_}"
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# If the extracted file already exists, move on
|
||||
if [[ -f "${NEWSPECIES_BYDATE}/${NEWFILE}" ]];then
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||||
echo "Extraction exists. Moving on"
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||||
continue
|
||||
fi
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||||
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||||
|
||||
# Before extracting the "Selection," the script checks to be sure the
|
||||
# original WAVE file still exists.
|
||||
[[ -f "${h}/${OLDFILE}" ]] || continue
|
||||
|
||||
# If a directory does not already exist for the species (by date),
|
||||
# it is created
|
||||
[[ -d "${NEWSPECIES_BYDATE}" ]] || mkdir -p "${NEWSPECIES_BYDATE}"
|
||||
|
||||
# If there are already 20 extracted entries for a given species
|
||||
# for today, remove the oldest file and create the new one.
|
||||
# if [[ "$(find ${NEWSPECIES_BYDATE} | wc -l)" -ge 20 ]];then
|
||||
# echo "20 ${SPECIES}s, already! Removing the oldest by-date and making a new one"
|
||||
# cd ${NEWSPECIES_BYDATE} || exit 1
|
||||
# ls -1t . | tail -n +20 | xargs -r rm -vv
|
||||
# fi
|
||||
|
||||
# If the above tests have passed, then the extraction happens.
|
||||
# After creating the extracted files by-date, and a directory tree
|
||||
# structured by-species, symbolic links are made to populate the new
|
||||
# directory.
|
||||
|
||||
# This section sets the SPACER that will be used to pad the audio clip with
|
||||
# context. If EXTRACTION_LENGTH is 10, for instance, 3 seconds are removed
|
||||
# from that value and divided by 2, so that the 3 seconds of the call are
|
||||
# within 3.5 seconds of audio context before and after.
|
||||
[ -z ${EXTRACTION_LENGTH} ] && EXTRACTION_LENGTH=6
|
||||
SPACER=$(echo "scale=1;(${EXTRACTION_LENGTH} - 3 )/2" |bc -l)
|
||||
START=$(echo "scale=1;${START} - ${SPACER}"|bc -l)
|
||||
END=$(echo "scale=1;${END} + ${SPACER}"|bc -l)
|
||||
|
||||
# If the SPACER would have the START value less that 0, start at the
|
||||
# beginning of the audio file. If the SPACER would make the END value
|
||||
# exceed the end of the audio file, end the extraction at the end of the
|
||||
# audio file.
|
||||
if (( $(echo "${START} < 1" | bc -l) ));then START=0;fi
|
||||
if (( $(echo "${END} > ${RECORDING_LENGTH}" | bc -l) ));then END=${RECORDING_LENGTH};fi
|
||||
|
||||
if [ "${RECORDING_LENGTH}" == "${EXTRACTION_LENGTH}" ];then
|
||||
START=0
|
||||
END=${RECORDING_LENGTH}
|
||||
fi
|
||||
|
||||
sox -V1 "${h}/${OLDFILE}" "${NEWSPECIES_BYDATE}/${NEWFILE}" \
|
||||
trim ="${START}" ="${END}"
|
||||
|
||||
RAW_SPECTROGRAM=${RAW_SPECTROGRAM}
|
||||
# Check if RAW_SPECTROGRAM is 1
|
||||
if [ "$RAW_SPECTROGRAM" == "1" ]; then
|
||||
# If it is, add "-r" as an argument to the SOX command
|
||||
sox -V1 "${NEWSPECIES_BYDATE}/${NEWFILE}" -n remix 1 rate 24k spectrogram \
|
||||
-t "${COMMON_NAME}" \
|
||||
-c "${NEWSPECIES_BYDATE//$HOME\/}/${NEWFILE}" \
|
||||
-o "${NEWSPECIES_BYDATE}/${NEWFILE}.png" \
|
||||
-r
|
||||
else
|
||||
# If it's not, run the SOX command without the "-r" argument
|
||||
sox -V1 "${NEWSPECIES_BYDATE}/${NEWFILE}" -n remix 1 rate 24k spectrogram \
|
||||
-t "$(echo "${COMMON_NAME}" | iconv -f utf8 -t ascii//TRANSLIT)" \
|
||||
-c "${NEWSPECIES_BYDATE//$HOME\/}/${NEWFILE}" \
|
||||
-o "${NEWSPECIES_BYDATE}/${NEWFILE}.png"
|
||||
fi
|
||||
|
||||
done < "${TMPFILE}"
|
||||
|
||||
# Once each line of the TMPFILE has been processed, the TMPFILE is emptied
|
||||
# for the next iteration of the for loop.
|
||||
>"${TMPFILE}"
|
||||
|
||||
# Rename files that have been processed so that they are not processed on the
|
||||
# next extraction.
|
||||
[[ -d "${PROCESSED}" ]] || mkdir "${PROCESSED}"
|
||||
#echo "Moving processed files to ${PROCESSED}"
|
||||
mv ${h}/* ${PROCESSED} &> /dev/null || true
|
||||
|
||||
# Removes old directories
|
||||
if echo "${h}" | grep $(date --date="-2 day" "+%A") &> /dev/null;then
|
||||
echo "Removing old directories"
|
||||
rm -drf "${h}"
|
||||
rm -drf "$(echo ${h} | cut -d'-' -f1-3)"
|
||||
fi
|
||||
done
|
||||
|
||||
#echo "Linking Processed files to "${EXTRACTED}/Processed" web directory"
|
||||
# After all audio extractions have taken place, a directory is created to house
|
||||
# the original WAVE and .txt files used for this extraction processs.
|
||||
if [[ ! -L ${EXTRACTED}/Processed ]] || [[ ! -e ${EXTRACTED}/Processed ]];then
|
||||
ln -sf ${PROCESSED} ${EXTRACTED}/Processed
|
||||
fi
|
||||
@@ -5,14 +5,13 @@ set -x
|
||||
my_dir=$HOME/BirdNET-Pi/scripts
|
||||
|
||||
|
||||
sudo systemctl stop birdnet_server.service
|
||||
sudo systemctl stop birdnet_recording.service
|
||||
|
||||
services=(chart_viewer.service
|
||||
spectrogram_viewer.service
|
||||
icecast2.service
|
||||
extraction.service
|
||||
birdnet_recording.service
|
||||
birdnet_analysis.service
|
||||
birdnet_log.service
|
||||
birdnet_stats.service)
|
||||
|
||||
@@ -20,31 +19,11 @@ for i in "${services[@]}";do
|
||||
sudo systemctl restart "${i}"
|
||||
done
|
||||
|
||||
sudo systemctl start birdnet_server.service
|
||||
sleep 5
|
||||
|
||||
for i in {1..5}; do
|
||||
# We want to loop here (5*5seconds) until the server is running and listening on its port
|
||||
systemctl is-active --quiet birdnet_server.service \
|
||||
&& grep 5050 <(netstat -tulpn 2>&1) \
|
||||
&& logger "[$0] birdnet_server.service is running" \
|
||||
# We want to loop here (5*5seconds) until the birdnet_analysis.service is running
|
||||
systemctl is-active --quiet birdnet_analysis.service \
|
||||
&& logger "[$0] birdnet_analysis.service is running" \
|
||||
&& break
|
||||
|
||||
sleep 5
|
||||
done
|
||||
|
||||
# Let's check a final time to ensure the server is running
|
||||
systemctl is-active --quiet birdnet_server.service && grep 5050 <(netstat -tulpn 2>&1)
|
||||
status=$?
|
||||
|
||||
if (( status != 0 )); then
|
||||
logger "[$0] Unable to start birdnet_server.service... Looping until it start properly"
|
||||
|
||||
until grep 5050 <(netstat -tulpn 2>&1);do
|
||||
sudo systemctl restart birdnet_server.service
|
||||
sleep 45
|
||||
done
|
||||
fi
|
||||
|
||||
# Finally start the birdnet_analysis.service
|
||||
sudo systemctl restart birdnet_analysis.service
|
||||
|
||||
+4
-364
@@ -1,23 +1,13 @@
|
||||
import re
|
||||
from pathlib import Path
|
||||
from tzlocal import get_localzone
|
||||
import datetime
|
||||
import sqlite3
|
||||
import requests
|
||||
import json
|
||||
import time
|
||||
import math
|
||||
import numpy as np
|
||||
import librosa
|
||||
import operator
|
||||
import socket
|
||||
import threading
|
||||
import os
|
||||
import gzip
|
||||
import time
|
||||
|
||||
import librosa
|
||||
import numpy as np
|
||||
|
||||
from utils.helpers import get_settings, Detection
|
||||
from utils.notifications import sendAppriseNotifications
|
||||
from utils.parse_settings import config_to_settings
|
||||
|
||||
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'
|
||||
os.environ['CUDA_VISIBLE_DEVICES'] = ''
|
||||
@@ -27,47 +17,13 @@ try:
|
||||
except BaseException:
|
||||
from tensorflow import lite as tflite
|
||||
|
||||
|
||||
HEADER = 64
|
||||
PORT = 5050
|
||||
SERVER = "localhost"
|
||||
ADDR = (SERVER, PORT)
|
||||
FORMAT = 'utf-8'
|
||||
DISCONNECT_MESSAGE = "!DISCONNECT"
|
||||
|
||||
userDir = os.path.expanduser('~')
|
||||
DB_PATH = userDir + '/BirdNET-Pi/scripts/birds.db'
|
||||
|
||||
INTERPRETER, INCLUDE_LIST, EXCLUDE_LIST = (None, None, None)
|
||||
PREDICTED_SPECIES_LIST = []
|
||||
model, priv_thresh, sf_thresh = (None, None, None)
|
||||
|
||||
mdata, mdata_params = (None, None)
|
||||
|
||||
server = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
|
||||
server.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1)
|
||||
|
||||
|
||||
def bind_port():
|
||||
try:
|
||||
server.bind(ADDR)
|
||||
except BaseException:
|
||||
print("Waiting on socket")
|
||||
time.sleep(5)
|
||||
|
||||
|
||||
# Open most recent Configuration and grab DB_PWD as a python variable
|
||||
with open(userDir + '/BirdNET-Pi/scripts/thisrun.txt', 'r') as f:
|
||||
this_run = f.readlines()
|
||||
audiofmt = "." + str(str(str([i for i in this_run if i.startswith('AUDIOFMT')]).split('=')[1]).split('\\')[0])
|
||||
priv_thresh = float("." + str(str(str([i for i in this_run if i.startswith('PRIVACY_THRESHOLD')]).split('=')[1]).split('\\')[0])) / 10
|
||||
try:
|
||||
model = str(str(str([i for i in this_run if i.startswith('MODEL')]).split('=')[1]).split('\\')[0])
|
||||
sf_thresh = str(str(str([i for i in this_run if i.startswith('SF_THRESH')]).split('=')[1]).split('\\')[0])
|
||||
except Exception:
|
||||
model = "BirdNET_6K_GLOBAL_MODEL"
|
||||
sf_thresh = 0.03
|
||||
|
||||
|
||||
def loadModel():
|
||||
|
||||
@@ -336,303 +292,6 @@ def get_metadata(lat, lon, week):
|
||||
return mdata
|
||||
|
||||
|
||||
def writeResultsToFile(detections, min_conf, path):
|
||||
|
||||
print('WRITING RESULTS TO', path, '...', end=' ')
|
||||
rcnt = 0
|
||||
with open(path, 'w') as rfile:
|
||||
rfile.write('Start (s);End (s);Scientific name;Common name;Confidence\n')
|
||||
for d in detections:
|
||||
for entry in detections[d]:
|
||||
if entry[1] >= min_conf and ((entry[0] in INCLUDE_LIST or len(INCLUDE_LIST) == 0)
|
||||
and (entry[0] not in EXCLUDE_LIST or len(EXCLUDE_LIST) == 0)
|
||||
and (entry[0] in PREDICTED_SPECIES_LIST or len(PREDICTED_SPECIES_LIST) == 0)):
|
||||
rfile.write(d + ';' + entry[0].replace('_', ';').split("/")[0] + ';' + str(entry[1]) + '\n')
|
||||
rcnt += 1
|
||||
print('DONE! WROTE', rcnt, 'RESULTS.')
|
||||
return
|
||||
|
||||
|
||||
def handle_client(conn, addr):
|
||||
global INCLUDE_LIST
|
||||
global EXCLUDE_LIST
|
||||
# print(f"[NEW CONNECTION] {addr} connected.")
|
||||
|
||||
while True:
|
||||
msg_length = conn.recv(HEADER).decode(FORMAT)
|
||||
if not msg_length:
|
||||
break
|
||||
|
||||
msg_length = int(msg_length)
|
||||
msg = conn.recv(msg_length).decode(FORMAT)
|
||||
if not msg:
|
||||
break
|
||||
if msg == DISCONNECT_MESSAGE:
|
||||
break
|
||||
|
||||
# print(f"[{addr}] {msg}")
|
||||
|
||||
args = type('', (), {})()
|
||||
|
||||
args.i = ''
|
||||
args.o = ''
|
||||
args.birdweather_id = '99999'
|
||||
args.include_list = 'null'
|
||||
args.exclude_list = 'null'
|
||||
args.overlap = 0.0
|
||||
args.week = -1
|
||||
args.sensitivity = 1.25
|
||||
args.min_conf = 0.70
|
||||
args.lat = -1
|
||||
args.lon = -1
|
||||
|
||||
for line in msg.split('||'):
|
||||
inputvars = line.split('=')
|
||||
if inputvars[0] == 'i':
|
||||
args.i = inputvars[1]
|
||||
elif inputvars[0] == 'o':
|
||||
args.o = inputvars[1]
|
||||
elif inputvars[0] == 'birdweather_id':
|
||||
args.birdweather_id = inputvars[1]
|
||||
elif inputvars[0] == 'include_list':
|
||||
args.include_list = inputvars[1]
|
||||
elif inputvars[0] == 'exclude_list':
|
||||
args.exclude_list = inputvars[1]
|
||||
elif inputvars[0] == 'overlap':
|
||||
args.overlap = float(inputvars[1])
|
||||
elif inputvars[0] == 'week':
|
||||
args.week = int(inputvars[1])
|
||||
elif inputvars[0] == 'sensitivity':
|
||||
args.sensitivity = float(inputvars[1])
|
||||
elif inputvars[0] == 'min_conf':
|
||||
args.min_conf = float(inputvars[1])
|
||||
elif inputvars[0] == 'lat':
|
||||
args.lat = float(inputvars[1])
|
||||
elif inputvars[0] == 'lon':
|
||||
args.lon = float(inputvars[1])
|
||||
|
||||
# Load custom species lists - INCLUDED and EXCLUDED
|
||||
if not args.include_list == 'null':
|
||||
INCLUDE_LIST = loadCustomSpeciesList(args.include_list)
|
||||
else:
|
||||
INCLUDE_LIST = []
|
||||
|
||||
if not args.exclude_list == 'null':
|
||||
EXCLUDE_LIST = loadCustomSpeciesList(args.exclude_list)
|
||||
else:
|
||||
EXCLUDE_LIST = []
|
||||
|
||||
birdweather_id = args.birdweather_id
|
||||
|
||||
# Read audio data & handle errors
|
||||
try:
|
||||
audioData = readAudioData(args.i, args.overlap)
|
||||
|
||||
except (NameError, TypeError) as e:
|
||||
print(f"Error with the following info: {e}")
|
||||
open('~/BirdNET-Pi/analyzing_now.txt', 'w').close()
|
||||
|
||||
finally:
|
||||
pass
|
||||
|
||||
# Get Date/Time from filename in case Pi gets behind
|
||||
# now = datetime.now()
|
||||
full_file_name = args.i
|
||||
# print('FULL FILENAME: -' + full_file_name + '-')
|
||||
file_name = Path(full_file_name).stem
|
||||
|
||||
# Get the RSTP stream identifier from the filename if it exists
|
||||
RTSP_ident_for_fn = ""
|
||||
RTSP_ident = re.search("RTSP_[0-9]+-", file_name)
|
||||
if RTSP_ident is not None:
|
||||
RTSP_ident_for_fn = RTSP_ident.group()
|
||||
|
||||
# Find and remove the identifier for the RSTP stream url it was from that is added when more than one
|
||||
# RSTP stream is recorded simultaneously, in order to make the filenames unique as filenames are all
|
||||
# generated at the same time
|
||||
file_name = re.sub("RTSP_[0-9]+-", "", file_name)
|
||||
|
||||
# Now we can read the date and time as normal
|
||||
# First portion of the filename contaning the date in Y m d
|
||||
file_date = file_name.split('-birdnet-')[0]
|
||||
# Second portion of the filename containing the time in H:M:S
|
||||
file_time = file_name.split('-birdnet-')[1]
|
||||
# Join the date and time together to get a complete string representing when the audio was recorded
|
||||
date_time_str = file_date + ' ' + file_time
|
||||
date_time_obj = datetime.datetime.strptime(date_time_str, '%Y-%m-%d %H:%M:%S')
|
||||
# print('Date:', date_time_obj.date())
|
||||
# print('Time:', date_time_obj.time())
|
||||
print('Date-time:', date_time_obj)
|
||||
now = date_time_obj
|
||||
current_date = now.strftime("%Y-%m-%d")
|
||||
current_time = now.strftime("%H:%M:%S")
|
||||
current_iso8601 = now.astimezone(get_localzone()).isoformat()
|
||||
|
||||
week_number = int(now.strftime("%V"))
|
||||
week = max(1, min(week_number, 48))
|
||||
|
||||
# Process audio data and get detections
|
||||
detections = analyzeAudioData(audioData, args.lat, args.lon, week, args.sensitivity, args.overlap)
|
||||
|
||||
# Write detections to output file
|
||||
min_conf = max(0.01, min(args.min_conf, 0.99))
|
||||
writeResultsToFile(detections, min_conf, args.o)
|
||||
|
||||
###############################################################################
|
||||
###############################################################################
|
||||
|
||||
soundscape_uploaded = False
|
||||
|
||||
# Write detections to Database
|
||||
myReturn = ''
|
||||
for i in detections:
|
||||
myReturn += str(i) + '-' + str(detections[i][0]) + '\n'
|
||||
|
||||
with open(userDir + '/BirdNET-Pi/BirdDB.txt', 'a') as rfile:
|
||||
for d in detections:
|
||||
species_apprised_this_run = []
|
||||
for entry in detections[d]:
|
||||
if entry[1] >= min_conf and ((entry[0] in INCLUDE_LIST or len(INCLUDE_LIST) == 0)
|
||||
and (entry[0] not in EXCLUDE_LIST or len(EXCLUDE_LIST) == 0)
|
||||
and (entry[0] in PREDICTED_SPECIES_LIST or len(PREDICTED_SPECIES_LIST) == 0)):
|
||||
# Write to text file.
|
||||
rfile.write(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';').split("/")[0] + ';'
|
||||
+ str(entry[1]) + ";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';'
|
||||
+ str(args.sensitivity) + ';' + str(args.overlap) + '\n')
|
||||
|
||||
# Write to database
|
||||
Date = str(current_date)
|
||||
Time = str(current_time)
|
||||
species = entry[0].split("/")[0]
|
||||
Sci_Name, Com_Name = species.split('_')
|
||||
score = entry[1]
|
||||
Confidence = str(round(score * 100))
|
||||
Lat = str(args.lat)
|
||||
Lon = str(args.lon)
|
||||
Cutoff = str(args.min_conf)
|
||||
Week = str(args.week)
|
||||
Sens = str(args.sensitivity)
|
||||
Overlap = str(args.overlap)
|
||||
Com_Name = Com_Name.replace("'", "")
|
||||
File_Name = Com_Name.replace(" ", "_") + '-' + Confidence + '-' + \
|
||||
Date.replace("/", "-") + '-birdnet-' + RTSP_ident_for_fn + Time + audiofmt
|
||||
|
||||
# Connect to SQLite Database
|
||||
for attempt_number in range(3):
|
||||
try:
|
||||
con = sqlite3.connect(DB_PATH)
|
||||
cur = con.cursor()
|
||||
cur.execute("INSERT INTO detections VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)", (Date, Time,
|
||||
Sci_Name, Com_Name, str(score), Lat, Lon, Cutoff, Week, Sens, Overlap, File_Name))
|
||||
|
||||
con.commit()
|
||||
con.close()
|
||||
break
|
||||
except BaseException:
|
||||
print("Database busy")
|
||||
time.sleep(2)
|
||||
|
||||
# Apprise of detection if not already alerted this run.
|
||||
if not entry[0] in species_apprised_this_run:
|
||||
settings_dict = config_to_settings(userDir + '/BirdNET-Pi/scripts/thisrun.txt')
|
||||
sendAppriseNotifications(species,
|
||||
str(score),
|
||||
str(round(score * 100)),
|
||||
File_Name,
|
||||
Date,
|
||||
Time,
|
||||
Week,
|
||||
Lat,
|
||||
Lon,
|
||||
Cutoff,
|
||||
Sens,
|
||||
Overlap,
|
||||
settings_dict,
|
||||
DB_PATH)
|
||||
species_apprised_this_run.append(entry[0])
|
||||
|
||||
print(str(current_date) +
|
||||
';' +
|
||||
str(current_time) +
|
||||
';' +
|
||||
entry[0].replace('_', ';') +
|
||||
';' +
|
||||
str(entry[1]) +
|
||||
';' +
|
||||
str(args.lat) +
|
||||
';' +
|
||||
str(args.lon) +
|
||||
';' +
|
||||
str(min_conf) +
|
||||
';' +
|
||||
str(week) +
|
||||
';' +
|
||||
str(args.sensitivity) +
|
||||
';' +
|
||||
str(args.overlap) +
|
||||
';' +
|
||||
File_Name +
|
||||
'\n')
|
||||
|
||||
if birdweather_id != "99999":
|
||||
try:
|
||||
|
||||
if soundscape_uploaded is False:
|
||||
# POST soundscape to server
|
||||
soundscape_url = 'https://app.birdweather.com/api/v1/stations/' + \
|
||||
birdweather_id + \
|
||||
'/soundscapes' + \
|
||||
'?timestamp=' + \
|
||||
current_iso8601
|
||||
|
||||
with open(args.i, 'rb') as f:
|
||||
wav_data = f.read()
|
||||
gzip_wav_data = gzip.compress(wav_data)
|
||||
response = requests.post(url=soundscape_url, data=gzip_wav_data, headers={'Content-Type': 'application/octet-stream',
|
||||
'Content-Encoding': 'gzip'})
|
||||
print("Soundscape POST Response Status - ", response.status_code)
|
||||
sdata = response.json()
|
||||
soundscape_id = sdata['soundscape']['id']
|
||||
soundscape_uploaded = True
|
||||
|
||||
# POST detection to server
|
||||
detection_url = "https://app.birdweather.com/api/v1/stations/" + birdweather_id + "/detections"
|
||||
start_time = d.split(';')[0]
|
||||
end_time = d.split(';')[1]
|
||||
post_begin = "{ "
|
||||
now_p_start = now + datetime.timedelta(seconds=float(start_time))
|
||||
current_iso8601 = now_p_start.astimezone(get_localzone()).isoformat()
|
||||
post_timestamp = "\"timestamp\": \"" + current_iso8601 + "\","
|
||||
post_lat = "\"lat\": " + str(args.lat) + ","
|
||||
post_lon = "\"lon\": " + str(args.lon) + ","
|
||||
post_soundscape_id = "\"soundscapeId\": " + str(soundscape_id) + ","
|
||||
post_soundscape_start_time = "\"soundscapeStartTime\": " + start_time + ","
|
||||
post_soundscape_end_time = "\"soundscapeEndTime\": " + end_time + ","
|
||||
post_commonName = "\"commonName\": \"" + entry[0].split('_')[1].split("/")[0] + "\","
|
||||
post_scientificName = "\"scientificName\": \"" + entry[0].split('_')[0] + "\","
|
||||
|
||||
if model == "BirdNET_GLOBAL_6K_V2.4_Model_FP16":
|
||||
post_algorithm = "\"algorithm\": " + "\"2p4\"" + ","
|
||||
else:
|
||||
post_algorithm = "\"algorithm\": " + "\"alpha\"" + ","
|
||||
|
||||
post_confidence = "\"confidence\": " + str(entry[1])
|
||||
post_end = " }"
|
||||
|
||||
post_json = post_begin + post_timestamp + post_lat + post_lon + post_soundscape_id + post_soundscape_start_time + \
|
||||
post_soundscape_end_time + post_commonName + post_scientificName + post_algorithm + post_confidence + post_end
|
||||
print(post_json)
|
||||
response = requests.post(detection_url, json=json.loads(post_json))
|
||||
print("Detection POST Response Status - ", response.status_code)
|
||||
except BaseException:
|
||||
print("Cannot POST right now")
|
||||
conn.send(myReturn.encode(FORMAT))
|
||||
|
||||
# time.sleep(3)
|
||||
|
||||
conn.close()
|
||||
|
||||
|
||||
def load_global_model():
|
||||
global INTERPRETER
|
||||
global model, priv_thresh, sf_thresh
|
||||
@@ -671,22 +330,3 @@ def run_analysis(file):
|
||||
d = Detection(time_slot.split(';')[0], time_slot.split(';')[1], entry[0], entry[1])
|
||||
confident_detections.append(d)
|
||||
return confident_detections
|
||||
|
||||
|
||||
def start():
|
||||
bind_port()
|
||||
# Load model
|
||||
global INTERPRETER
|
||||
INTERPRETER = loadModel()
|
||||
server.listen()
|
||||
# print(f"[LISTENING] Server is listening on {SERVER}")
|
||||
while True:
|
||||
conn, addr = server.accept()
|
||||
thread = threading.Thread(target=handle_client, args=(conn, addr))
|
||||
thread.start()
|
||||
# print(f"[ACTIVE CONNECTIONS] {threading.activeCount() - 1}")
|
||||
|
||||
|
||||
# print("[STARTING] server is starting...")
|
||||
if __name__ == '__main__':
|
||||
start()
|
||||
|
||||
@@ -4,10 +4,10 @@ function service_status($name) {
|
||||
$home = shell_exec("awk -F: '/1000/{print $6}' /etc/passwd");
|
||||
$home = trim($home);
|
||||
|
||||
if($name == "birdnet_server.service") {
|
||||
$filesinproc=trim(shell_exec("ls ".$home."/BirdSongs/Processed | wc -l"));
|
||||
if($name == "birdnet_analysis.service") {
|
||||
$filesinproc=trim(shell_exec("ls ".$home."/BirdSongs/StreamData | wc -l"));
|
||||
if($filesinproc > 200) {
|
||||
echo "<span style='color:#fc6603'>(stalled - backlog of ".$filesinproc." files in ~/BirdSongs/Processed/)</span>";
|
||||
echo "<span style='color:#fc6603'>(stalled - backlog of ".$filesinproc." files in ~/BirdSongs/StreamData/)</span>";
|
||||
return;
|
||||
}
|
||||
}
|
||||
@@ -45,21 +45,7 @@ function service_status($name) {
|
||||
<button type="submit" name="submit" value="sudo systemctl enable --now birdnet_log.service">Enable</button>
|
||||
</form>
|
||||
<form action="" method="GET">
|
||||
<h3>Extraction Service <?php echo service_status("extraction.service");?></h3>
|
||||
<button type="submit" name="submit" value="sudo systemctl stop extraction.service">Stop</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl restart extraction.service">Restart </button>
|
||||
<button type="submit" name="submit" value="sudo systemctl disable --now extraction.service">Disable</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl enable --now extraction.service">Enable</button>
|
||||
</form>
|
||||
<form action="" method="GET">
|
||||
<h3>BirdNET Analysis Server <?php echo service_status("birdnet_server.service");?></h3>
|
||||
<button type="submit" name="submit" value="sudo systemctl stop birdnet_server.service">Stop</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl restart birdnet_server.service">Restart</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl disable --now birdnet_server.service">Disable</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl enable --now birdnet_server.service">Enable</button>
|
||||
</form>
|
||||
<form action="" method="GET">
|
||||
<h3>BirdNET Analysis Client <?php echo service_status("birdnet_analysis.service");?></h3>
|
||||
<h3>BirdNET Analysis <?php echo service_status("birdnet_analysis.service");?></h3>
|
||||
<button type="submit" name="submit" value="sudo systemctl stop birdnet_analysis.service">Stop</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl restart birdnet_analysis.service">Restart</button>
|
||||
<button type="submit" name="submit" value="sudo systemctl disable --now birdnet_analysis.service">Disable</button>
|
||||
|
||||
@@ -5,9 +5,7 @@
|
||||
services=(birdnet_recording.service
|
||||
custom_recording.service
|
||||
birdnet_analysis.service
|
||||
birdnet_server.service
|
||||
chart_viewer.service
|
||||
extraction.service
|
||||
spectrogram_viewer.service)
|
||||
|
||||
for i in "${services[@]}";do
|
||||
|
||||
Reference in New Issue
Block a user