cleanup: remove commented-out and dead code
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@@ -190,8 +190,6 @@ def sunrise_sunset_scatter(date_range):
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current_date = start_date
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for current_date in date_range:
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# current_date = datetime.fromisocalendar(2022, week + 1, 5)
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# time_zone = datetime.now()
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sun_rise = sun.get_local_sunrise_time(current_date)
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sun_dusk = sun.get_local_sunset_time(current_date)
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@@ -218,7 +216,6 @@ def sunrise_sunset_scatter(date_range):
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def hms_to_dec(t):
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# (h, m, s) = t.split(':')
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h = t.hour
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m = t.minute / 60
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s = t.second / 3600
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@@ -227,11 +224,8 @@ def hms_to_dec(t):
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def hms_to_str(t):
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# (h, m, s) = t.split(':')
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h = t.hour
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m = t.minute
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# s = t.second / 3600
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# result = h + m + s
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return "%02d:%02d" % (h, m)
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@@ -244,7 +238,6 @@ if daily is False:
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species,
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index=0)
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# filt = df2['Com_Name'] == specie
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if specie == 'All':
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df_counts = int(hourly[hourly.index == specie]['All'].iloc[0])
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fig = make_subplots(
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@@ -255,10 +248,6 @@ if daily is False:
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subplot_titles=('<b>Top ' + str(top_N) + ' Species in Date Range ' + str(start_date) + ' to ' + str(
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end_date) + '<br>for ' + str(resample_sel) + ' sampling interval.' + '</b>',
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'Total Detect:' + str('{:,}'.format(df_counts))
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# + ' Confidence Max:' + str(
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# '{:.2f}%'.format(max(df2[df2['Com_Name'] == specie]['Confidence']) * 100)) +
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# ' ' + ' Median:' + str(
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# '{:.2f}%'.format(np.median(df2[df2['Com_Name'] == specie]['Confidence']) * 100))
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)
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)
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fig.layout.annotations[1].update(x=0.7, y=0.25, font_size=15)
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@@ -380,29 +369,6 @@ if daily is False:
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st.audio(userDir + '/BirdSongs/Extracted/By_Date/' + date_dir + '/' + specie_dir + '/' + recording)
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except Exception:
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st.title('RECORDING NOT AVAILABLE :(')
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# try:
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# con = sqlite3.connect(userDir + '/BirdNET-Pi/scripts/birds.db')
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# cur = con.cursor()
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cola, colb, colc, cold = st.columns((3, 1, 1, 1))
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with colb:
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seen = st.checkbox('Reviewed')
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if seen:
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with colc:
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verified = st.radio("Verification", ['True Positive', 'False Positive'])
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if verified == "False Positive":
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df_names = pd.read_csv(userDir + '/BirdNET-Pi/model/labels.txt', delimiter='_', names=['Sci_Name', 'Com_Name'])
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df_unknown = pd.DataFrame({"Sci_Name": ["UNKNOWN"], "Com_Name": ["UNKNOWN"]})
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df_names = pd.concat([df_unknown, df_names], ignore_index=True)
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with cold:
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corrected = st.selectbox('What species?', df_names['Com_Name'])
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# cur.execute("UPDATE detections SET Seen = seen WHERE File_Name = recording")
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# con.commit()
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# con.close()
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# except BaseException:
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# print("Database busy")
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# time.sleep(2)
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else:
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@@ -411,22 +377,10 @@ if daily is False:
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species[1:],
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index=0)
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# filt = df2[df2['Com_Name'] == specie]
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df_counts = int(hourly[hourly.index == specie]['All'])
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fig = st.container()
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fig = make_subplots(rows=1, cols=1)
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# specs= [[{"type":"xy","rowspan":1},{"type":"heatmap","rowspan":1}]],
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# subplot_titles=('<b>Daily Top '+ str(top_N) + ' Species in Date Range '+ str(start_date) +' to '+ str(end_date) +'</b>',
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# '<b>Daily ' + specie+ ' Detections on 15 minute intervals </b>'),
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# # 'Total Detect:'+str('{:,}'.format(df_counts))+
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# # ' Confidence Max:'+str('{:.2f}%'.format(max(df2[df2['Com_Name']==specie]['Confidence'])*100))+
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# # ' '+' Median:'+str('{:.2f}%'.format(np.median(df2[df2['Com_Name']==specie]['Confidence'])*100))
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# # )
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# )
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# fig.add_trace(go.Bar(y=top_N_species.index, x=top_N_species, orientation='h'), row=1,col=1)
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df4 = df2['Com_Name'][df2['Com_Name'] == specie].resample('15min').count()
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df4.index = [df4.index.date, df4.index.time]
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day_hour_freq = df4.unstack().fillna(0)
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@@ -437,21 +391,15 @@ if daily is False:
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fig_y = [h.strftime('%H:%M') for h in day_hour_freq.columns.tolist()]
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day_hour_freq.columns = fig_dec_y
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fig_z = day_hour_freq.values.transpose()
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# fig_heatmap = go.Figure(data=go.Heatmap(x=fig_x,y=fig_y,z=fig_z))
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# fig.update_layout(
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# margin=dict(l=0, r=0, t=50, b=0),
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# yaxis={'categoryorder':'total ascending'})
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color_pals = px.colors.named_colorscales()
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selected_pal = st.sidebar.selectbox('Select Color Pallet for Daily Detections', color_pals)
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heatmap = go.Heatmap(
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# x=fig_x, y=fig_y,
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x=fig_x,
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y=day_hour_freq.columns,
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z=fig_z, # heat.values,
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showscale=False,
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# text=labels,
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texttemplate="%{text}", autocolorscale=False, colorscale=selected_pal
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)
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daysback_range, sunrise_list, sunrise_text_list = sunrise_sunset_scatter(day_hour_freq.index.tolist())
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@@ -490,17 +438,9 @@ else:
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plt_topN_today = (df6['Com_Name'].value_counts()[:readings])
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freq_order = pd.value_counts(df6['Com_Name']).iloc[:readings].index
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# confmax = df6.groupby('Com_Name')['Confidence'].max()
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# reorder confmax to detection frequency order
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# confmax = confmax.reindex(freq_order)
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# norm = plt.Normalize(confmax.values.min(), confmax.values.max())
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#
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# colors = plt.cm.Greens(norm(confmax))
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fig.add_trace(go.Bar(y=plt_topN_today.index, x=plt_topN_today, marker_color='seagreen', orientation='h'), row=1,
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col=1)
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# plot=sns.countplot(y='Com_Name', data = df_plt_topN_today, palette = colors, order=freq_order, ax=axs[0])
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df6['Hour of Day'] = [r.hour for r in df6.index.time]
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heat = pd.crosstab(df6['Com_Name'], df6['Hour of Day'])
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# Order heatmap Birds by frequency of occurrance
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@@ -525,15 +465,8 @@ else:
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showgrid=True)
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fig.update_layout(xaxis_ticks="inside",
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margin=dict(l=0, r=0, t=50, b=0))
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# container=st.container()
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# config={'displayModelBar': False}
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st.plotly_chart(fig, use_container_width=True) # , config=config)
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# cols3,cols4=st.columns((1,1))
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# extract_date=Date_Slider
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# audio_file = open('/home/*/BirdSongs/Extracted/By_Date/2022-03-22/Yellow-streaked_Greenbul/Yellow-streaked_Greenbul-77-2022-03-22-birdnet-15:04:28.mp3', 'rb')
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# audio_bytes = audio_file.read()
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# cols4.audio(audio_bytes, format='audio/mp3')
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if profile:
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profiler.stop()
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profiler.print()
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