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adding maraidb support

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This commit is contained in:
Patrick McGuire
2021-10-10 15:28:18 -04:00
parent 5873d8bb9b
commit 560cf34439
8 changed files with 130 additions and 30 deletions
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Birders_Guide_Installer.sh
+4 -1
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@@ -132,7 +132,7 @@ and then close the Mouse Pad editing window to continue."
exit 1
fi
if [ -z ${LATITUDE} ] || [ -z ${LONGITUDE} ] || [ -z ${CADDY_PWD} ] || [ -z ${ICE_PWD} ];then
if [ -z ${LATITUDE} ] || [ -z ${LONGITUDE} ] || [ -z ${CADDY_PWD} ] || [ -z ${ICE_PWD} ] || [ -z ${DB_PWD} ] || [ -z ${DB_ROOT_PWD} ];then
echo
echo
echo "It looks like you haven't filled out the Birders_Guide_Installer_Configuration.txt file
@@ -423,6 +423,9 @@ EXTRACTION_LENGTH=
LAST_RUN=
THIS_RUN=
DB_PWD=${DB_PWD}
DB_ROOT_PWD=${DB_ROOT_PWD}
EOF
[ -d /etc/birdnet ] || sudo mkdir /etc/birdnet
sudo ln -sf ${my_dir}/birdnet.conf /etc/birdnet/birdnet.conf
Birders_Guide_Installer_Configuration.txt
+23 -13
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@@ -1,34 +1,44 @@
# Birders Guide Installer Configuration File
#####NOTE: the '#' sign needs to precede the lines where they are currently
##### DO NOT DELETE ANY OF THEM!!!
###########################################################################
# Fill this out in order to install BirdNET-Lite
#
# 1. To find this information, you can go to https://maps.google.com
# Follow the instructions for each section.
###########################################################################
# 1. To find your latitude and longitude, you can go to https://maps.google.com
# 1a. Find the location on the map where you will be putting the BirdNET-Lite
# 1b. Right-click the location to view the latitude and longitude and click them to
# copy them to your clip-board.
# 2. Enter the latitude and longitude here. Be certain not to mix them up and
# only go to the thousandth's decimal place. The first number is the latitude,
# and the second is longitude. See the example below.
# 3. Set a password that you will use to access your live audio stream. This is the
# "CADDY_PWD" field. You can set this to anything, but keep it alpha-numeric.
# You will probably also want to write this one down if you ever plan to listen
# to the live stream.
# 4. Set a password that that IceCast2 will use to authenticate the stream source.
# You can set this to anything also, but keep it alpha-numeric. You will never use
# this again, so just set it to your favorite word.
# 5. FILE SAVE!!! Don't forget to save this file after editing.
# 6. Close this window to continue the installation.
# Example: these coordinates would indicate the Eiffel Tower in Paris, France.
# LATITUDE=48.858
# LONGITUDE=2.294
LATITUDE=
LONGITUDE=
# 1. CADDY_PWD is the password you will use to access your live audio stream and
# maintenance tools. You can set this to anything, but keep it alpha-numeric.
# You will probably also want to write this one down if you ever plan to listen
# to the live stream.
# 2. ICE_PWD is the password that IceCast2 will use to authenticate the stream source.
# You can set this to anything also, but keep it alpha-numeric. You will never use
# this again, so just set it to your favorite word.
CADDY_PWD=
ICE_PWD=
# 1. DB_PWD is the password that the system will use to access the database. Set this to
# anything you want.
# 2. DB_ROOT_PWD is the password that the system will use to secure the database's root
# account. Set this to anything you want.
DB_PWD=
DB_ROOT_PWD=
# This section can be left alone. If you setup a Pushed.co
# mobile application, you can enter the App secret and secret
# key in order to enable phone notifications for new species
analyze.py
+47 -1
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@@ -13,6 +13,9 @@ import librosa
import numpy as np
import math
import time
###############################################################################
import mysql.connector
###############################################################################
from datetime import date, datetime
def loadModel():
@@ -130,7 +133,7 @@ def predict(sample, interpreter, sensitivity):
# Remove species that are on blacklist
for i in range(min(10, len(p_sorted))):
if p_sorted[i][0] in ['Human_Human', 'Non-bird_Non-bird', 'Noise_Noise']:
if p_sorted[i][0] in ['Human_Human', 'Non-bird_Non-bird', 'Noise_Noise','Eastern_Screech-Owl', 'Boat-tailed_Grackle', 'American_Woodcock', 'Turkey_Vulture', 'Evening_Grosbeak']:
p_sorted[i] = (p_sorted[i][0], 0.0)
# Only return first the top ten results
@@ -219,11 +222,17 @@ def main():
writeResultsToFile(detections, min_conf, args.o)
now = datetime.now()
###############################################################################
###############################################################################
# Write detections to Database
for i in detections:
print("\n", detections[i][0],"\n")
with open('BirdDB.txt', 'a') as rfile:
for d in detections:
print("\n", "Database Entry", "\n")
for entry in detections[d]:
if entry[1] >= min_conf and (entry[0] in WHITE_LIST or len(WHITE_LIST) == 0):
current_date = now.strftime("%Y/%m/%d")
@@ -231,10 +240,47 @@ def main():
rfile.write(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';') + ';' \
+ str(entry[1]) +";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';' \
+ str(sensitivity) +';' + str(args.overlap) + '\n')
def insert_variables_into_table(Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap):
try:
connection = mysql.connector.connect(host='localhost',
database='birds',
user='birder',
password='maddypaddy')
cursor = connection.cursor()
mySql_insert_query = """INSERT INTO detections (Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap)
VALUES (%s, %s, %s, %s, %s, %s, %s, %s, %s, %s, %s) """
record = (Date, Time, Sci_Name, Com_Name, Confidence, Lat, Lon, Cutoff, Week, Sens, Overlap)
cursor.execute(mySql_insert_query, record)
connection.commit()
print("Record inserted successfully into detections table")
except mysql.connector.Error as error:
print("Failed to insert record into detections table {}".format(error))
finally:
if connection.is_connected():
connection.close()
print("MySQL connection is closed")
species = entry[0]
sci_name,com_name = species.split('_')
insert_variables_into_table(str(current_date), str(current_time), sci_name, com_name, \
str(entry[1]), str(args.lat), str(args.lon), str(min_conf), str(week), \
str(sensitivity), str(args.overlap))
print(str(current_date) + ';' + str(current_time) + ';' + entry[0].replace('_', ';') + ';' + str(entry[1]) +";" + str(args.lat) + ';' + str(args.lon) + ';' + str(min_conf) + ';' + str(week) + ';' + str(sensitivity) +';' + str(args.overlap) + '\n')
time.sleep(3)
now = datetime.now()
###############################################################################
###############################################################################
if __name__ == '__main__':
main()
scripts/createdb.sh
+21 -7
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@@ -1,7 +1,24 @@
#!/usr/bin/env bash
# test to create a database from bash
mysql << 'EOF'
drop DATABASE birds;
# This script performs the mysql_secure_installation
# Creates the birds database
# Creates the detections table
# Creates the birder user and grants them appropriate
# permissions
# If using this script to re-initialize (DROP then CREATE)
# the DB, be sure to run this as root or with sudo
source /etc/birdnet/birdnet.conf
mysql_secure_installation << EOF
y
${DB_ROOT_PWD}
${DB_ROOT_PWD}
y
y
y
EOF
mysql << EOF
drop database birds;
CREATE DATABASE IF NOT EXISTS birds;
USE birds;
@@ -18,11 +35,8 @@ CREATE TABLE IF NOT EXISTS detections (
Week INT,
Sens FLOAT,
Overlap FLOAT);
GRANT ALL ON birds.* TO 'birder'@'localhost' IDENTIFIED BY '${DB_PWD}' WITH GRANT OPTION;
LOAD DATA LOCAL INFILE '/home/pi/Birding-Pi/BirdDB.txt'
INTO TABLE detections
FIELDS TERMINATED BY ';';
SELECT * FROM detections;
exit
EOF
scripts/extract_new_birdsounds.sh
+1 -1
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@@ -9,7 +9,7 @@ set -e
# Remove temporary file
trap 'rm -f $TMPFILE' EXIT
source /etc/birdnet/birdnet.conf
[ -z ${RECORDING_LENGTH} ] && RECORDING_LENGTH=12
[ -z ${RECORDING_LENGTH} ] && RECORDING_LENGTH=15
# Set Variables
TMPFILE=$(mktemp)
scripts/install_birdnet.sh
+2
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@@ -61,6 +61,8 @@ install_birdnet() {
sudo pip3 install colorama==0.4.4
echo "Installing librosa"
sudo pip3 install librosa
echo "Installing mysql-connector-python"
sudo pip3 install mysql-connector-python
}
read -sp "\
scripts/install_config.sh
+13
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@@ -126,6 +126,15 @@ get_ICE_PWD() {
fi
}
get_DB_PWDS() {
if [ ! -z ${DB_PWD} ];then
read -p "Please set a password for your database: " DB_PWD
echo
read -p "Please set a root password for the database: " DB_ROOT_PWD
echo
fi
}
get_PUSHED() {
while true; do
read -n1 -p "Do you have a free App key to receive mobile notifications via Pushed.co?" YN
@@ -180,6 +189,7 @@ configure() {
get_RECS_DIR
get_LATITUDE
get_LONGITUDE
get_DB_PWDS
get_DO_EXTRACTIONS
get_DO_RECORDING
get_TIMESTAMP_FORMAT
@@ -437,6 +447,9 @@ RECORDING_LENGTH=
EXTRACTION_LENGTH=
DB_PWD=${DB_PWD}
DB_ROOT_PWD=${DB_ROOT_PWD}
LAST_RUN=$(dirname ${my_dir})/lastrun.txt
THIS_RUN=$(dirname ${my_dir})/thisrun.txt
EOF
scripts/install_services.sh
+16 -4
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@@ -15,6 +15,17 @@ install_scripts() {
rm /usr/local/bin/index.html
}
install_mariadb() {
if ! which mysql &> /dev/null;then
echo "Installing MariaDB Server"
apt -qqy update
apt -qqy install mariadb-server
echo "MariaDB Installed"
fi
echo "Initializing the database"
$(dirname ${my_dir})/createdb.sh
}
install_birdnet_analysis() {
if ! which mysql &> /dev/null;then
echo "Installing MariaDB Server"
@@ -305,7 +316,7 @@ RestartSec=3
Type=simple
User=${USER}
Environment=TERM=xterm-256color
ExecStart=/usr/local/bin/gotty -p 8080 --title-format "Birding-Pi Log" journalctl -fu birdnet_analysis.service
ExecStart=/usr/local/bin/gotty -p 8080 --title-format "Birding-Pi Log" journalctl -o cat -fu birdnet_analysis.service
[Install]
WantedBy=multi-user.target
@@ -322,7 +333,7 @@ RestartSec=3
Type=simple
User=${USER}
Environment=TERM=xterm-256color
ExecStart=/usr/local/bin/gotty -p 8888 --title-format "Extractions Log" journalctl -fu extraction.service
ExecStart=/usr/local/bin/gotty -p 8888 --title-format "Extractions Log" journalctl -o cat -fu extraction.service
[Install]
WantedBy=multi-user.target
@@ -372,9 +383,9 @@ install_sox() {
install_php() {
if ! which pip &> /dev/null || ! which php-fpm7.3;then
echo "Installing PHP and PHP-FPM"
echo "Installing PHP modules"
apt -qq update
apt install -qqy php php-fpm
apt install -qqy php php-fpm php7.3-mysql
else
echo "PHP and PHP-FPM installed"
fi
@@ -515,6 +526,7 @@ install_selected_services() {
install_gotty_logs
install_tmux
install_sox
install_mariadb
install_php
install_spectrogram_service
install_edit_birdnet_conf